HL_7N8B_123
3D structure
- PDB id
- 7N8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cycloheximide bound vacant 80S structure isolated from cbf5-D95A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- GAUCAGAUAC(OMC)
- Length
- 11 nucleotides
- Bulged bases
- 7N8B|1|B5|U|1004, 7N8B|1|B5|A|1005
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7N8B_123 not in the Motif Atlas
- Geometric match to HL_4WF9_011
- Geometric discrepancy: 0.1565
- The information below is about HL_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.7
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 22
Unit IDs
7N8B|1|B5|G|997
7N8B|1|B5|A|998
7N8B|1|B5|U|999
7N8B|1|B5|C|1000
7N8B|1|B5|A|1001
7N8B|1|B5|G|1002
7N8B|1|B5|A|1003
7N8B|1|B5|U|1004
7N8B|1|B5|A|1005
7N8B|1|B5|C|1006
7N8B|1|B5|OMC|1007
Current chains
- Chain B5
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain BO
- 40S ribosomal protein S14-A
- Chain Ba
- 40S ribosomal protein S26-B
Coloring options: