HL_7N8B_124

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

7N8B|1|B5|U|1057, 7N8B|1|B5|U|1058, 7N8B|1|B5|U|1059, 7N8B|1|B5|U|1060, 7N8B|1|B5|A|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7N8B|1|B5|U|1055
7N8B|1|B5|U|1056
7N8B|1|B5|U|1057
7N8B|1|B5|U|1058
7N8B|1|B5|U|1059
7N8B|1|B5|U|1060
7N8B|1|B5|A|1061
7N8B|1|B5|A|1062
7N8B|1|B5|U|1063
7N8B|1|B5|G|1064

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain BB

40S ribosomal protein S1-A

Chain Bb

40S ribosomal protein S27-A