HL_7NAV_012

3D structure

PDB id

7NAV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state D (Consensus refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

7NAV|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NAV_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.3305

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7NAV|1|A|G|462
7NAV|1|A|U|463
7NAV|1|A|U|464
7NAV|1|A|A|465
7NAV|1|A|A|466
7NAV|1|A|U|467
7NAV|1|A|A|468
7NAV|1|A|C|469
7NAV|1|A|C|470

Current chains

Chain A

16S rRNA

Nearby chains