HL_7NAV_029

3D structure

PDB id

7NAV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state D (Consensus refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NAV_029 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.1674

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7NAV|1|A|C|1314
7NAV|1|A|U|1315
7NAV|1|A|G|1316
7NAV|1|A|C|1317
7NAV|1|A|A|1318
7NAV|1|A|A|1319
7NAV|1|A|C|1320
7NAV|1|A|U|1321
7NAV|1|A|C|1322
7NAV|1|A|G|1323

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S13

Chain N

30S ribosomal protein S14

Chain S

30S ribosomal protein S19