HL_7NBU_047

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

7NBU|1|a|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NBU_047 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0897

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7NBU|1|a|G|410
7NBU|1|a|G|411
7NBU|1|a|A|412
7NBU|1|a|C|413
7NBU|1|a|C|414
7NBU|1|a|A|415
7NBU|1|a|U|416
7NBU|1|a|C|417

Current chains

Chain a

23S ribosomal RNA

Nearby chains