HL_7NBU_069

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

7NBU|1|a|A|1453, 7NBU|1|a|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NBU_069 not in the Motif Atlas

Geometric match to HL_7A0S_017

Geometric discrepancy: 0.1467

The information below is about HL_7A0S_017

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

7NBU|1|a|C|1451
7NBU|1|a|G|1452
7NBU|1|a|A|1453
7NBU|1|a|C|1454
7NBU|1|a|G|1455
7NBU|1|a|G|1456
7NBU|1|a|U|1457
7NBU|1|a|U|1458
7NBU|1|a|G|1459

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L17