HL_7NBU_088

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NBU_088 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.133

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7NBU|1|a|G|2303
7NBU|1|a|G|2304
7NBU|1|a|U|2305
7NBU|1|a|C|2306
7NBU|1|a|G|2307
7NBU|1|a|G|2308
7NBU|1|a|A|2309
7NBU|1|a|C|2310
7NBU|1|a|A|2311
7NBU|1|a|U|2312
7NBU|1|a|C|2313

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L5