HL_7NBU_109

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCC

Length

34 nucleotides

Bulged bases

7NBU|1|a|U|2131, 7NBU|1|a|U|2132, 7NBU|1|a|G|2138, 7NBU|1|a|U|2139, 7NBU|1|a|C|2145, 7NBU|1|a|C|2146, 7NBU|1|a|A|2154, 7NBU|1|a|A|2158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NBU|1|a|G|2128
7NBU|1|a|C|2129
7NBU|1|a|U|2130
7NBU|1|a|U|2131
7NBU|1|a|U|2132
7NBU|1|a|G|2133
7NBU|1|a|A|2134
7NBU|1|a|A|2135
7NBU|1|a|G|2136
7NBU|1|a|U|2137
7NBU|1|a|G|2138
7NBU|1|a|U|2139
7NBU|1|a|G|2140
7NBU|1|a|G|2141
7NBU|1|a|A|2142
7NBU|1|a|C|2143
7NBU|1|a|G|2144
7NBU|1|a|C|2145
7NBU|1|a|C|2146
7NBU|1|a|A|2147
7NBU|1|a|G|2148
7NBU|1|a|U|2149
7NBU|1|a|C|2150
7NBU|1|a|U|2151
7NBU|1|a|G|2152
7NBU|1|a|C|2153
7NBU|1|a|A|2154
7NBU|1|a|U|2155
7NBU|1|a|G|2156
7NBU|1|a|G|2157
7NBU|1|a|A|2158
7NBU|1|a|G|2159
7NBU|1|a|C|2160
7NBU|1|a|C|2161

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain K

30S ribosomal protein S11