HL_7NFX_036
3D structure
- PDB id
- 7NFX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- ACGAGAACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NFX_036 not in the Motif Atlas
- Homologous match to HL_8C3A_031
- Geometric discrepancy: 0.1568
- The information below is about HL_8C3A_031
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
7NFX|1|5|A|2376
7NFX|1|5|C|2377
7NFX|1|5|G|2378
7NFX|1|5|A|2379
7NFX|1|5|G|2380
7NFX|1|5|A|2381
7NFX|1|5|A|2382
7NFX|1|5|C|2383
7NFX|1|5|U|2384
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain P
- uL22
- Chain R
- 60S RIBOSOMAL PROTEIN EL19
- Chain d
- eL31
- Chain x
- Signal recognition particle 54 kDa protein
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