HL_7NFX_049

3D structure

PDB id

7NFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7NFX|1|5|U|2874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NFX_049 not in the Motif Atlas

Geometric match to HL_4PMI_004

Geometric discrepancy: 0.1155

The information below is about HL_4PMI_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7NFX|1|5|C|2872
7NFX|1|5|U|2873
7NFX|1|5|U|2874
7NFX|1|5|C|2875
7NFX|1|5|G|2876
7NFX|1|5|G|2877

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain n

60s ribosomal protein l41

Chain p

eL43