HL_7NFX_052

3D structure

PDB id

7NFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

7NFX|1|5|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NFX_052 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.4151

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7NFX|1|5|C|3668
7NFX|1|5|G|3669
7NFX|1|5|C|3670
7NFX|1|5|G|3671
7NFX|1|5|G|3672
7NFX|1|5|C|3673
7NFX|1|5|G|3674

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain G

60S ribosomal protein L7a

Chain N

Ribosomal protein L15