HL_7NFX_056

3D structure

PDB id

7NFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7NFX|1|5|A|3876, 7NFX|1|5|A|3877, 7NFX|1|5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NFX_056 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.1146

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7NFX|1|5|G|3873
7NFX|1|5|G|3874
7NFX|1|5|G|3875
7NFX|1|5|A|3876
7NFX|1|5|A|3877
7NFX|1|5|C|3878
7NFX|1|5|G|3879
7NFX|1|5|G|3880
7NFX|1|5|G|3881
7NFX|1|5|C|3882

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain e

eL32