HL_7NFX_067

3D structure

PDB id

7NFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAGCAGAAU

Length

9 nucleotides

Bulged bases

7NFX|1|5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NFX_067 not in the Motif Atlas

Geometric match to HL_4WF9_053

Geometric discrepancy: 0.3659

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7NFX|1|5|A|4473
7NFX|1|5|A|4474
7NFX|1|5|G|4475
7NFX|1|5|C|4476
7NFX|1|5|A|4477
7NFX|1|5|G|4478
7NFX|1|5|A|4479
7NFX|1|5|A|4480
7NFX|1|5|U|4481

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain m

60S RIBOSOMAL PROTEIN EL40