HL_7NFX_073

3D structure

PDB id

7NFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAGAGGC

Length

8 nucleotides

Bulged bases

7NFX|1|5|G|4910, 7NFX|1|5|A|4911, 7NFX|1|5|G|4913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NFX_073 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.2063

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7NFX|1|5|G|4907
7NFX|1|5|G|4908
7NFX|1|5|A|4909
7NFX|1|5|G|4910
7NFX|1|5|A|4911
7NFX|1|5|G|4912
7NFX|1|5|G|4913
7NFX|1|5|C|4914

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain O

uL13