HL_7NFX_074

3D structure

PDB id

7NFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

7NFX|1|5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NFX_074 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.127

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7NFX|1|5|G|4975
7NFX|1|5|U|4976
7NFX|1|5|A|4977
7NFX|1|5|G|4978
7NFX|1|5|A|4979
7NFX|1|5|C|4980
7NFX|1|5|G|4981
7NFX|1|5|A|4982
7NFX|1|5|C|4983

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain P

uL22