HL_7NHK_006

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

7NHK|1|A|A|198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHK_006 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.1007

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7NHK|1|A|G|196
7NHK|1|A|A|197
7NHK|1|A|A|198
7NHK|1|A|A|199
7NHK|1|A|C|200
7NHK|1|A|A|201
7NHK|1|A|U|202
7NHK|1|A|C|203

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L15

Chain Z

50S ribosomal protein L28