HL_7NHK_008

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHK_008 not in the Motif Atlas

Homologous match to HL_5J7L_141

Geometric discrepancy: 0.1121

The information below is about HL_5J7L_141

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

7NHK|1|A|C|248
7NHK|1|A|G|249
7NHK|1|A|G|250
7NHK|1|A|C|251
7NHK|1|A|G|252
7NHK|1|A|A|253
7NHK|1|A|G|254

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain O

50S ribosomal protein L15