HL_7NHK_026

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAUAAGA

Length

8 nucleotides

Bulged bases

7NHK|1|A|U|997, 7NHK|1|A|G|1000

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHK_026 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.1894

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

7NHK|1|A|U|994
7NHK|1|A|G|995
7NHK|1|A|A|996
7NHK|1|A|U|997
7NHK|1|A|A|998
7NHK|1|A|A|999
7NHK|1|A|G|1000
7NHK|1|A|A|1001

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain P

50S ribosomal protein L16