HL_7NHK_028

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

7NHK|1|A|A|1109

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHK_028 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.3538

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7NHK|1|A|C|1103
7NHK|1|A|U|1104
7NHK|1|A|U|1105
7NHK|1|A|A|1106
7NHK|1|A|G|1107
7NHK|1|A|A|1108
7NHK|1|A|A|1109
7NHK|1|A|G|1110
7NHK|1|A|C|1111
7NHK|1|A|A|1112
7NHK|1|A|G|1113

Current chains

Chain A

23S rRNA

Nearby chains