HL_7NHK_055

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUUGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHK_055 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.233

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7NHK|1|A|G|2316
7NHK|1|A|G|2317
7NHK|1|A|U|2318
7NHK|1|A|U|2319
7NHK|1|A|G|2320
7NHK|1|A|G|2321
7NHK|1|A|A|2322
7NHK|1|A|A|2323
7NHK|1|A|A|2324
7NHK|1|A|U|2325
7NHK|1|A|C|2326

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L5