HL_7NHK_061

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUAGUCG

Length

8 nucleotides

Bulged bases

7NHK|1|A|G|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHK_061 not in the Motif Atlas

Homologous match to HL_4WF9_057

Geometric discrepancy: 0.1663

The information below is about HL_4WF9_057

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7NHK|1|A|U|2541
7NHK|1|A|G|2542
7NHK|1|A|U|2543
7NHK|1|A|A|2544
7NHK|1|A|G|2545
7NHK|1|A|U|2546
7NHK|1|A|C|2547
7NHK|1|A|G|2548

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain K

50S ribosomal protein L6