HL_7NHK_072

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGUCAGGUAG

Length

11 nucleotides

Bulged bases

7NHK|1|D|G|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHK_072 not in the Motif Atlas

Homologous match to HL_1H4S_001

Geometric discrepancy: 0.2619

The information below is about HL_1H4S_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_80411.1

Basepair signature

cWW-F-cSH-F-F-F-F

Number of instances in this motif group

1

Unit IDs

7NHK|1|D|C|13
7NHK|1|D|A|14
7NHK|1|D|G|15
7NHK|1|D|U|16
7NHK|1|D|C|17
7NHK|1|D|A|18
7NHK|1|D|G|19
7NHK|1|D|G|20
7NHK|1|D|U|21
7NHK|1|D|A|22
7NHK|1|D|G|23

Current chains

Chain D

tRNA-fMETi

Nearby chains

Chain 0

ABC-F type ribosomal protection protein Lsa(A)

Chain A

Large subunit ribosomal RNA; LSU rRNA