HL_7NHK_098

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUUAGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHK_098 not in the Motif Atlas

Geometric match to HL_3R4F_001

Geometric discrepancy: 0.1656

The information below is about HL_3R4F_001

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

7NHK|1|a|A|1160
7NHK|1|a|U|1161
7NHK|1|a|U|1162
7NHK|1|a|U|1163
7NHK|1|a|A|1164
7NHK|1|a|G|1165
7NHK|1|a|U|1166
7NHK|1|a|U|1167

Current chains

Chain a

16S rRNA

Nearby chains

Chain j

30S ribosomal protein S9