HL_7NHL_004

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGUUAUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHL_004 not in the Motif Atlas

Homologous match to HL_4WF9_004

Geometric discrepancy: 0.2357

The information below is about HL_4WF9_004

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7NHL|1|A|A|136
7NHL|1|A|G|137
7NHL|1|A|U|138
7NHL|1|A|U|139
7NHL|1|A|A|140
7NHL|1|A|U|141
7NHL|1|A|G|142
7NHL|1|A|U|143

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L23