HL_7NHL_017

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUUAAUG

Length

8 nucleotides

Bulged bases

7NHL|1|A|U|590, 7NHL|1|A|U|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHL_017 not in the Motif Atlas

Homologous match to HL_4WF9_017

Geometric discrepancy: 0.1511

The information below is about HL_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50318.1

Basepair signature

cWW-cSH-F-F

Number of instances in this motif group

1

Unit IDs

7NHL|1|A|C|587
7NHL|1|A|G|588
7NHL|1|A|U|589
7NHL|1|A|U|590
7NHL|1|A|A|591
7NHL|1|A|A|592
7NHL|1|A|U|593
7NHL|1|A|G|594

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L13

Chain U

50S ribosomal protein L21