HL_7NHL_024

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAAAUU

Length

7 nucleotides

Bulged bases

7NHL|1|A|A|826

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHL_024 not in the Motif Atlas

Homologous match to HL_4WF9_024

Geometric discrepancy: 0.1697

The information below is about HL_4WF9_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79773.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

8

Unit IDs

7NHL|1|A|A|824
7NHL|1|A|G|825
7NHL|1|A|A|826
7NHL|1|A|A|827
7NHL|1|A|A|828
7NHL|1|A|U|829
7NHL|1|A|U|830

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2