HL_7NHL_032

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHL_032 not in the Motif Atlas

Homologous match to HL_4WF9_031

Geometric discrepancy: 0.1352

The information below is about HL_4WF9_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

7NHL|1|A|C|1260
7NHL|1|A|G|1261
7NHL|1|A|U|1262
7NHL|1|A|A|1263
7NHL|1|A|A|1264
7NHL|1|A|G|1265

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L15

Chain T

50S ribosomal protein L20

Chain U

50S ribosomal protein L21