HL_7NHL_042

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUGAGAAUU

Length

9 nucleotides

Bulged bases

7NHL|1|A|A|1678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHL_042 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.1212

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7NHL|1|A|A|1673
7NHL|1|A|U|1674
7NHL|1|A|G|1675
7NHL|1|A|A|1676
7NHL|1|A|G|1677
7NHL|1|A|A|1678
7NHL|1|A|A|1679
7NHL|1|A|U|1680
7NHL|1|A|U|1681

Current chains

Chain A

23S rRNA

Nearby chains