HL_7NHL_053

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUAUCG

Length

7 nucleotides

Bulged bases

7NHL|1|A|U|2240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHL_053 not in the Motif Atlas

Homologous match to HL_4WF9_048

Geometric discrepancy: 0.2559

The information below is about HL_4WF9_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42293.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

7NHL|1|A|C|2236
7NHL|1|A|U|2237
7NHL|1|A|U|2238
7NHL|1|A|A|2239
7NHL|1|A|U|2240
7NHL|1|A|C|2241
7NHL|1|A|G|2242

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain G

50S ribosomal protein L2