HL_7NHL_061

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGUUCACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHL_061 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.1652

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

7NHL|1|A|A|2498
7NHL|1|A|G|2499
7NHL|1|A|U|2500
7NHL|1|A|U|2501
7NHL|1|A|C|2502
7NHL|1|A|A|2503
7NHL|1|A|C|2504
7NHL|1|A|A|2505
7NHL|1|A|U|2506

Current chains

Chain A

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain P

50S ribosomal protein L16