HL_7NHL_063

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHL_063 not in the Motif Atlas

Homologous match to HL_4WF9_058

Geometric discrepancy: 0.175

The information below is about HL_4WF9_058

Detailed Annotation

LSU A loop

Broad Annotation

LSU A loop

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

7NHL|1|A|C|2578
7NHL|1|A|U|2579
7NHL|1|A|G|2580
7NHL|1|A|U|2581
7NHL|1|A|U|2582
7NHL|1|A|C|2583
7NHL|1|A|G|2584

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Lincosamide-streptogramin A resistance protein