HL_7NHL_064

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHL_064 not in the Motif Atlas

Homologous match to HL_4WF9_059

Geometric discrepancy: 0.1012

The information below is about HL_4WF9_059

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

7NHL|1|A|C|2621
7NHL|1|A|G|2622
7NHL|1|A|U|2623
7NHL|1|A|G|2624
7NHL|1|A|A|2625
7NHL|1|A|G|2626

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Lincosamide-streptogramin A resistance protein

Chain G

50S ribosomal protein L2