HL_7NHL_083

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHL_083 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1186

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7NHL|1|a|A|328
7NHL|1|a|A|329
7NHL|1|a|C|330
7NHL|1|a|U|331
7NHL|1|a|G|332
7NHL|1|a|A|333
7NHL|1|a|G|334
7NHL|1|a|A|335
7NHL|1|a|C|336
7NHL|1|a|A|337
7NHL|1|a|C|338
7NHL|1|a|G|339
7NHL|1|a|G|340
7NHL|1|a|U|341

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S16

Chain u

30S ribosomal protein S20