HL_7NHL_087

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAGUAACUGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHL_087 not in the Motif Atlas

Geometric match to HL_4TUE_223

Geometric discrepancy: 0.3701

The information below is about HL_4TUE_223

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7NHL|1|a|A|470
7NHL|1|a|A|471
7NHL|1|a|G|472
7NHL|1|a|U|473
7NHL|1|a|A|474
7NHL|1|a|A|475
7NHL|1|a|C|476
7NHL|1|a|U|477
7NHL|1|a|G|478
7NHL|1|a|U|479

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S16