HL_7NHL_101

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGACAAA

Length

7 nucleotides

Bulged bases

7NHL|1|a|C|1179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHL_101 not in the Motif Atlas

Homologous match to HL_5J7L_026

Geometric discrepancy: 0.3813

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7NHL|1|a|U|1176
7NHL|1|a|G|1177
7NHL|1|a|A|1178
7NHL|1|a|C|1179
7NHL|1|a|A|1180
7NHL|1|a|A|1181
7NHL|1|a|A|1182

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

30S ribosomal protein S2