HL_7NHL_103

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

7NHL|1|a|C|1328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHL_103 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.2315

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7NHL|1|a|C|1325
7NHL|1|a|U|1326
7NHL|1|a|G|1327
7NHL|1|a|C|1328
7NHL|1|a|A|1329
7NHL|1|a|A|1330
7NHL|1|a|C|1331
7NHL|1|a|U|1332
7NHL|1|a|C|1333
7NHL|1|a|G|1334

Current chains

Chain a

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S13

Chain o

30S ribosomal protein S14 type Z

Chain t

30S ribosomal protein S19