HL_7NHM_019

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGUAAAU

Length

7 nucleotides

Bulged bases

7NHM|1|A|A|658

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHM_019 not in the Motif Atlas

Geometric match to HL_6WPI_001

Geometric discrepancy: 0.1899

The information below is about HL_6WPI_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

7NHM|1|A|A|655
7NHM|1|A|G|656
7NHM|1|A|U|657
7NHM|1|A|A|658
7NHM|1|A|A|659
7NHM|1|A|A|660
7NHM|1|A|U|661

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L4