HL_7NHM_042

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUGAGAAUU

Length

9 nucleotides

Bulged bases

7NHM|1|A|A|1678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHM_042 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.1234

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

7NHM|1|A|A|1673
7NHM|1|A|U|1674
7NHM|1|A|G|1675
7NHM|1|A|A|1676
7NHM|1|A|G|1677
7NHM|1|A|A|1678
7NHM|1|A|A|1679
7NHM|1|A|U|1680
7NHM|1|A|U|1681

Current chains

Chain A

23S rRNA

Nearby chains