HL_7NHM_053

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

7NHM|1|A|G|2277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHM_053 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.1043

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7NHM|1|A|C|2275
7NHM|1|A|U|2276
7NHM|1|A|G|2277
7NHM|1|A|G|2278
7NHM|1|A|G|2279
7NHM|1|A|G|2280
7NHM|1|A|C|2281
7NHM|1|A|G|2282
7NHM|1|A|G|2283

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Transfer RNA; tRNA

Chain P

50S ribosomal protein L16

Chain Z

50S ribosomal protein L27