HL_7NHM_056

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHM_056 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.1198

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

7NHM|1|A|U|2351
7NHM|1|A|G|2352
7NHM|1|A|U|2353
7NHM|1|A|A|2354
7NHM|1|A|A|2355
7NHM|1|A|A|2356
7NHM|1|A|G|2357
7NHM|1|A|G|2358

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Transfer RNA; tRNA

Chain J

50S ribosomal protein L5

Chain P

50S ribosomal protein L16

Chain Z

50S ribosomal protein L27