HL_7NHM_059

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

7NHM|1|A|C|2433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHM_059 not in the Motif Atlas

Homologous match to HL_4WF9_055

Geometric discrepancy: 0.1134

The information below is about HL_4WF9_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7NHM|1|A|C|2431
7NHM|1|A|G|2432
7NHM|1|A|C|2433
7NHM|1|A|A|2434
7NHM|1|A|U|2435
7NHM|1|A|G|2436
7NHM|1|A|G|2437
7NHM|1|A|A|2438
7NHM|1|A|A|2439
7NHM|1|A|G|2440

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L15