HL_7NHM_060

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGUUCACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHM_060 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.1752

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7NHM|1|A|A|2498
7NHM|1|A|G|2499
7NHM|1|A|U|2500
7NHM|1|A|U|2501
7NHM|1|A|C|2502
7NHM|1|A|A|2503
7NHM|1|A|C|2504
7NHM|1|A|A|2505
7NHM|1|A|U|2506

Current chains

Chain A

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L36