HL_7NHM_061

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAGUCG

Length

8 nucleotides

Bulged bases

7NHM|1|A|G|2556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHM_061 not in the Motif Atlas

Homologous match to HL_4WF9_057

Geometric discrepancy: 0.1339

The information below is about HL_4WF9_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

7NHM|1|A|U|2555
7NHM|1|A|G|2556
7NHM|1|A|U|2557
7NHM|1|A|A|2558
7NHM|1|A|G|2559
7NHM|1|A|U|2560
7NHM|1|A|C|2561
7NHM|1|A|G|2562

Current chains

Chain A

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain K

50S ribosomal protein L6