HL_7NHN_014

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

7NHN|1|A|G|457

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHN_014 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0939

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7NHN|1|A|G|456
7NHN|1|A|G|457
7NHN|1|A|A|458
7NHN|1|A|C|459
7NHN|1|A|C|460
7NHN|1|A|A|461
7NHN|1|A|U|462
7NHN|1|A|C|463

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L15