HL_7NHN_029

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

7NHN|1|A|A|1116

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHN_029 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.2464

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7NHN|1|A|C|1110
7NHN|1|A|U|1111
7NHN|1|A|U|1112
7NHN|1|A|A|1113
7NHN|1|A|G|1114
7NHN|1|A|A|1115
7NHN|1|A|A|1116
7NHN|1|A|G|1117
7NHN|1|A|C|1118
7NHN|1|A|A|1119
7NHN|1|A|G|1120

Current chains

Chain A

23S rRNA

Nearby chains