HL_7NHN_048

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

7NHN|1|A|U|1988

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHN_048 not in the Motif Atlas

Homologous match to HL_4WF9_046

Geometric discrepancy: 0.1221

The information below is about HL_4WF9_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33350.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7NHN|1|A|G|1982
7NHN|1|A|G|1983
7NHN|1|A|U|1984
7NHN|1|A|A|1985
7NHN|1|A|A|1986
7NHN|1|A|G|1987
7NHN|1|A|U|1988
7NHN|1|A|U|1989
7NHN|1|A|C|1990

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Lmo0919 protein

Chain N

50S ribosomal protein L14

Chain a

Small subunit ribosomal RNA; SSU rRNA