HL_7NHN_060

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUAGUCG

Length

8 nucleotides

Bulged bases

7NHN|1|A|G|2562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHN_060 not in the Motif Atlas

Homologous match to HL_4WF9_057

Geometric discrepancy: 0.1244

The information below is about HL_4WF9_057

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7NHN|1|A|U|2561
7NHN|1|A|G|2562
7NHN|1|A|U|2563
7NHN|1|A|A|2564
7NHN|1|A|G|2565
7NHN|1|A|U|2566
7NHN|1|A|C|2567
7NHN|1|A|G|2568

Current chains

Chain A

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain K

50S ribosomal protein L6