HL_7NHN_067

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAAGAUGAU

Length

9 nucleotides

Bulged bases

7NHN|1|A|A|2849

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHN_067 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0957

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7NHN|1|A|A|2848
7NHN|1|A|A|2849
7NHN|1|A|A|2850
7NHN|1|A|G|2851
7NHN|1|A|A|2852
7NHN|1|A|U|2853
7NHN|1|A|G|2854
7NHN|1|A|A|2855
7NHN|1|A|U|2856

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L3

Chain Q

50S ribosomal protein L17