HL_7NHN_073

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHN_073 not in the Motif Atlas

Homologous match to HL_5AXM_003

Geometric discrepancy: 0.0999

The information below is about HL_5AXM_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

7NHN|1|D|G|54
7NHN|1|D|U|55
7NHN|1|D|U|56
7NHN|1|D|C|57
7NHN|1|D|A|58
7NHN|1|D|A|59
7NHN|1|D|A|60
7NHN|1|D|U|61
7NHN|1|D|C|62

Current chains

Chain D

tRNA-fMet

Nearby chains

Chain 0

Lmo0919 protein

Chain J

50S ribosomal protein L5