HL_7NHN_085

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUAACUGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NHN_085 not in the Motif Atlas

Geometric match to HL_4TUE_223

Geometric discrepancy: 0.383

The information below is about HL_4TUE_223

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7NHN|1|a|G|472
7NHN|1|a|A|473
7NHN|1|a|G|474
7NHN|1|a|U|475
7NHN|1|a|A|476
7NHN|1|a|A|477
7NHN|1|a|C|478
7NHN|1|a|U|479
7NHN|1|a|G|480
7NHN|1|a|C|481

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S16